Journal of Data Mining in Genomics & Proteomics

Abdoulaye Baniré Diallo

Publications

• Research Article
  PGR: A Novel Graph Repository of Protein 3D-Structures
  Author(s): Wajdi Dhifli and Abdoulaye Baniré Diallo* Wajdi Dhifli and Abdoulaye Baniré Diallo*
  
  Graph theory and graph mining constitute rich fields of computational techniques to study the structures, topologies and properties of graphs. These techniques constitute a good asset in bioinformatics if there exist efficient methods for transforming biological data into graphs. In this paper, we present Protein Graph Repository (PGR), a novel database of protein 3D-structures transformed into graphs allowing the use of the large repertoire of graph theory techniques in protein mining. This repository contains graph representations of all currently known protein 3D-structures described in the Protein Data Bank (PDB). PGR also provides an efficient online converter of protein 3Dstructures into graphs, biological and graph-based description, pre-computed protein graph attributes and statistics, visualization of each protein graph, as well as graph-based protein similarity search tool. .. View More»
  DOI: 10.4172/2153-0602.1000172

  Abstract PDF