Journal of Data Mining in Genomics & Proteomics

Conformation-dependent epitopes recognized by prion protein antibodies probed using mutational scanning and deep sequencing.

Scaffolding of a bacterial genome using MinION nanopore sequencing.

Laehnemann D, Borkhardt A, McHardy AC (2016) Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction. ‎Brief Bioinform 17: 154-179.

Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.

Metagenomic approach for identification of the pathogens associated with diarrhea in stool specimens.

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate.

The effect of dietary resistant starch type 2 on the microbiota and markers of gut inflammation in rural Malawi children.

Brain-gut-microbiota axis: challenges for translation in psychiatry.

Comparative analysis of functional metagenomic annotation and the mappability of short reads.

A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome.

Metagenomic analysis of double-stranded DNA viruses in healthy adults.

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.

A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

Propelling the paradigm shift from reductionism to systems nutrition.

Clustering and interpretation on real nutritional data.

Polyunsaturated fatty acids intake, omega-6/omega-3 ratio and mortality: Findings from two independent nationwide cohorts.

Using Genome Wide Estimates of Heritability to Examine the Relevance of Gene-Environment Interplay.

Towards Semantic Biomedical Problem Solving.

Basic Principles of Molecular Pathophysiology and Etiology of Cardiovascular Disorders